Transcriptomics: Open Access
Open Access

International Conference on Transcriptomics

July 27-29, 2015 Orlando, USA

Accepted Abstracts

• Paving the way for transcriptomics analysis in the reproduction processes of hexaploid wheat (Triticum aestivum L.)

  A Aniko Dobosy, Zsolt Ponya

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• Genes that respond to H2O2 are also evoked under light in Arabidopsis

  Dianjing Guo

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• Investigation on glandular trichome transcriptome of Artemisia annua L

  Cao Yong1, Wang Wei2, Qi Yan2 and Guo Dianjing2

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• Characteristics of Pseudorabies virus transcripts analyzed by PacBio and Illumina sequencing techniques

  Dora Tombacz1, Zsolt Csabai1, Peter Olah1, Donald Sharon2, Michael Snyder2 and Zsolt Boldogkoi1

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• Generation of a CTO gene mutant Pseudorabies virus

  Istvan Prazsak, Kitti Hosszu, Zsolt Csabai, Peter Olah, Dora Tombacz and Zsolt Boldogkoi

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• The path to understanding salt tolerance in plants: Transcriptome assembly, profiling and analysis of the halophyte, Suaeda fruticosa

  Joann Diray-Arce1, Mark Clement1, Bilquees Gul2, Ajmal Khan2 and Brent L Nielsen1

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• RNA binding antibodies as tools for probing transcriptomes

  Joseph A Piccirilli

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• Transcriptionally regulated gma-miR166a and its target GmPHB in two different soybean genotypes under various stresses

  Nang Myint Phyu Sin Htwe, Zhong-Qin Luo, Long-Guo Jin and Li-Juan Qiu

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• Identification of novel splicing form of Decapentaplegic (Dpp) gene in Bombyx mandarina

  Seung-Won Park1, Jung-Won Choi1, Seong Ryul Kim2, Gwang-Ho Choi2, Kee-Young Kim2 and TaeWon Goo3

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• Assessment and diagnostic relevance of novel serum biomarkers for early decision of ST-elevation myocardial infarction

  Suk Woo Nam, Hyung Seok Kim, Woo Chan Shin, Qyingu Shen, Hee doo Yang, Hyung Eun Ahn, Hye Young Kim and Jung Woo Eun

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• Transcriptome analysis of Arabidopsis light and brassinosteroid mutants

  Sunghwa Choe1, Yu-Jeong Jeong1, Bokyung Kim2 and Soon-Il Kwon2

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• A text-mining based comparison of RNAi screening assays to NIH chemical probes

  Tugba Onal-Suzek1 and Yanli Wang2

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• Coupled processing of snoRNA 5’ and 3’ termini in Saccharomyces Cerevisiae

  Zaneta Matuszek, Sylwia A Szczepaniak and Joanna Kufel

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• Analysis of long non coding transcripts in wild type and knock-out mutant Pseudorabies virus strains

  Zsolt Csabai1, Dora Tombacz1, Peter Olah1, Donald Sharon2, Michael Snyder2 and Zsolt Boldogkoi

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• Does sequence specificity of the 5'end of mRNA affect ribosome loading?

  Anjali Pai

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• Mapping differential gene expression of vancomycin resistant Enterococci associated to Eicchornia crassipes roots

  Pushpa Lata1 and Rishi Shanker2

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• Synthesis and characterization of Zirconium nanoparticles and its anti-microbial activities against oral pathogens

  Sri Janani J

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• Analysis of plant gene expression during passion fruit-Xanthomonas axonopodis interaction implicates lipoxygenase 2 in host defence

  M. L. C. Vieira, A. A. Santos; R. A. Arenhart; L. Santini; C. B. Monteiro-Vitorello and C. F. Munhoz

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• Gene and proteomic analysis of differentially expressed protein in hemocytes of giant freshwater prawn Macrobrachium rosenbergii infected with ifectious hypodermal and hematopoietic necrosis virus (IHHNV)

  Alinejad, Tahereh. Vejayan. Rofina Yasmin Othman. Subha Bhassu.

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• Isolation of scarabid specific Bacillus thuringiensis (Bt) containing cry8 gene from sugarcane ecosystem

  Harish T and Singaravelu B

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• RNA-seq analysis of Macrobrachium rosenbergii hepatopancreas in response to Vibrio parahaemolyticus infection

  Ramarao Seriramalu and Subha Bhassu

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• Implicating a multi-cellular interactome responsible for integrative regulation of cell-specificdifferentiation, branching morphogenesis, vascularization, and organ-scale patterning during the saccular phase of lung deve

  B.J. Aronow1, Y. Wang2, A. Jegga2, A.-K.T. Perl3, E. Brunskill2, S. Potter2, J. Kitzmiller3, Y. Xu4, J.A. Whitsett2

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• FRAMA: From RNA-seq data to annotated mRNA assemblies

  Martin Bens

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• Transcription regulation of global gene expression profiling reveals lactoferrin intervention influences neurodevelopment and cognition

  Y Chen1, Z Q Zheng1, X Zhu1, Y J Shi2, F A Troy II3, and B Wang1, 4

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• Fragile regions of the human genome: Possible origins and implications for complex diseases

  Carlos Fernando Prada Quiroga

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• Development of transcriptomic biomarkers for precision medicine: Specimens, standards, and signatures

  Carolyn Compton

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• Transcriptional regulation of guanylylcyclase/natriuretic peptide receptor-a gene by cooperative interactions of histone acetylases and transacting factors

  Kailash N Pandey

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• Interaction between RNAi and RNA editing pathways

  Kazuko Nishikura

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• Metatranscriptomics of colonic lesions in inflammatory bowel disease

  Marcus J Claesson1, Feargal Ryan1, Emilo Laserna1, John O callaghan1, Ian B Jeffery1, Aldert Zomer2, Aine Fanning1 and Fergus Shanahan1

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• The capacity of Aspergillus niger to sense and respond to cell wall stress requires at least three transcription factors: RlmA, MsnA and CrzA

  Markus R M Fiedler1, Annett Lorenz2, Benjamin M Nitsche1,2, Cees AMJJ van den Hondel3, Arthur FJ Ram2,4and Vera Meyer1,2,4

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• Organelle genomes: Revealing the relation between structure and taxonomy

  Michael G Sadovsky

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• The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger

  Min Jin Kwon1,2, Thomas R Jorgensen1,3, Benjamin M Nitsche1,4, Mark Arentshorst1, Joohae Park1,Arthur FJ Ram1,2and Vera Meyer1,2,4

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• Fundamental properties of the bacterial SOS response: A theoretical background

  Oleg V Belov

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• Cell type-specific analysis of the inner ear from datasets to the gear

  Ronna Hertzano

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• Recent advancement in Mendelian Genomics and data management/analysis challenges at the Yale Center for Genome Analysis

  Shrikant Mane

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• Correcting for pedigree structure improves the identification of differentially expressed genes in multiplex families

  Stefania Merella1, Federica Esposito1, Ana-Maria Osiceanu1, Paola Brambilla1, Melissa Sorosina1, Filippo Martinelli Boneschi1, Elia Stupka1, 2 and Paolo Provero1, 3

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• Silencing of hormonal biosynthesis genes by double stranded RNA (dsRNA) impairs larval growth and development of cotton bollworm (Helicoverpa armigera)

  Anjali Jaiwal1, Natarajaswamy Kalleda2 and Manchikatla Venket Rajam1

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• The structure of state-of-art gene fusion-finder algorithms

  R A Calogero

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• Genome-wide transcriptome analysis reveals that chromium stress signalling controls the expression of genes in glutathione metabolism in rice

  Debasis Chakrabarty

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• Mechanism of action of IQGAPs on Hep G2 cells by means of RNA interference of IQGAP1 gene

  Khairy M A Zoheir1, 2, Gamaleldin I Harisa1, 3, Sheikh Fayaz Ahmad1, Mushtaq A Ahmad1, Abdelkader A Ashour1 and Sabry M Attia1, 3

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• Comprehensive analysis and utilization of Hexaploid wheat transcriptome

  Alagu Manickavelu, Ayumi Kosaka, Tomohiro Ban and Yasunari Ogihara

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• De novo assembly for the identification of novel and conserved heat-responsive microRNAs in wheat (Triticum aestivum L.)

  Ranjeet Ranjan Kumar, Himanshu Pathak, Sushil Kumar Sharma, Yugal Kishore Kala, Mahesh Kumar Nirjal, Gyanendra Pratap Singh, Suneha Goswami and Raj Deo Rai

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• SSFinder: High throughput CRISPR-Cas target sites prediction tool

  Shailesh Sharma

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• Use of GeneNet to infer Arabidopsis gene regulatory networks (GRNs) from microarray data

  David Foutch

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• Broad existence of pluripotency factor regulated transcript isoforms with stage-specific alternative first exons (SAFE) in mouse embryonic stem cell

  Xiu-Jie Wang

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• Association of CTLA-4 gene49 G/A polymorphism in breast cancer patients with invasive ductal carcinoma

  Sushmavenkat

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• Selective inhibition of HMGA1 by triplex forming oligonucleotides induce apoptosis in human cervical cancer

  Md Zahid Akhter and Moganty R Rajeswari

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• Cannabinoid WIN55,212-2 induces cell cycle arrest and inhibits the proliferation and migration of human hepatocellular carcinoma BEL7402 cells

  Qing Zhao

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• Identification and characterization of human genes radio-modulated by ionizing and non-ionizing radiation: Importance in cancer prevention and diagnosis

  Farid Menaa

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• Transcriptomic, proteomic and metabolic studies of neuroblastoma cells to cytotoxicant, myricitrin

  Shailasree S

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• Regulation of mesenchymal stem cell differentiation towards osteoblast by MicroRNAs

  N Selvamurugan

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• Aging and induced pluripotent stem cells

  Yunlong Qin

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• Genomic analysis reveals mutational signatures and frequently altered genes in esophageal squamous cell carcinoma

  Yongping Cui

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• De novo RNA seq assembly and annotation of important legume-Vicia sativa L. (SRR403901)

  Hetalkumar J Panchal1 and Sagar S Patel2

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• Interrogating cancer transcriptome reprogramming

  Wei Zhang

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• The role of flagella in Clostridium difficile pathogenesis and biofilm formation: Comparison between a non-epidemic and an epidemic strain

  Sozy Baban

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• Prediction of molecular targets responsible for adhesions (Lu/BCAM- α4β1) in sickle cell disease: Combined quantum mechanics and molecular mechanics study

  Amiy Dutt Chaturvedi1 and P K Patra2

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• Transcriptome sequencing analysis of Oryza meyeriana reveals the differences in disease resistance with Oryza sativa

  Bin He

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• An insight into the sialotranscriptome and proteome of Hyalomma dromedarii salivary gland extract

  Chaima Bensaoud1, Milton Y Nishiyama Jr2, Ursula Castro de Oliveira2, Juliana Mozer Sciani 3, Fernenda Faria2, Junqueira-de-Azevedo Ide L2, Ana Marisa Chudzinski-Tavassi2, Ali Bouattour1 and Youmna M’ghirbi1

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• Studies on genetic fidelity of cryopreserved calliof date palm cultivars (Phoenix dactylifera) from Saudi Arabia

  Fahad Al-Qurainy, Salim Khan, Mohammad Nadeem and Mohamed Tarroum

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• Systems biology approaches for understanding adaptive responses of a tropical fish Channa striatus to high temperature stress

  Gopal Krishna Purohit1, Arabinda Mahanty2, Bimal Prasanna Mohanty2 and Sasmita Mohanty1

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• The relationship between religious beliefs

  Seyed Mehdi Hashemi

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• Comparative transcriptome analysis of different chemotypes of Withania somnifera to elucidate withanolide biosynthesis

  Parul Gupta, Ridhi Goel, Saumya Pathak, Mehar Hasan Asif and Prabodh Trivedi

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• The spatiotemporal expression patterns of microRNA in response to high temperature stress in rice

  Shikha Goel and Neeti Sanan- Mishra

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• Epigenetic regulation offiber development in cotton

  Sunil Kumar Singh and Samir Sawant

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• Differential transcriptomics in early-stage fruits from two genotypes of Annona squamosa L with contrast in seed number

  Yogesh Gupta, Srikant S, Mantri Sudhir and P Singh

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• Role of SHANK3 gene in Phelan-McDermid syndrome (PMS)

  Sujitha Mariappan and Annamalai Arunachalam

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• Long non-coding RNA analyses for osteoporosis in Caucasian women

  Zhou Y and Deng HW

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